ASSEMBLE+ Project Opens Call

Assemble Plus Call

Until 13 February 2022, researchers from industry and academia can apply for free access to top-class marine research infrastructures, thanks to the opening of the ninth call of the ASSEMBLE Plus project (Association of European Marine Biological Laboratories Expanded).

 ASSEMBLE Plus offers access to over 32 marine stations and institutes in 13 countries across Europe and overseas for basic and applied research in the marine science field (see overleaf). Researchers from both industry and academia can apply for on-site and remote access. Sponsorship includes travel and subsistence for two persons (one return trip per person, up to 30 days). Successful applicants will be able to carry out their project free-of-charge (subject to some limitations).

Please visit assembleplus.eu for updates on available services, call dates, application procedures and any further information on current and upcoming calls for access.

EOSC Future ‘Ask Me Anything’ Webinars

EOSC Future Webinars

Starting in February 2022, EOSC Future (one of the projects in which LifeWatch ERIC is currently involved) will organise ‘ask me anything’ webinars.

On the first Tuesday of every month, participants will have the chance to ask questions about a variety of EOSC services and resources.

During these exclusive Q&A sessions, resources and resource categories available on the EOSC platform will be presented, discussed and, in some cases, tested out.

Each session will take place online from 14.00-15.00 CET. 

The first 3 webinars are listed below:

  • 01/02/2022: Data storage
  • 01/03/2022: Software 
  • 05/04/2022: Compute services

Have a question about another EOSC service that is not listed above? More dates and topics are coming throughout 2022-2023. Eventually, the webinars will cover all resource categories on the EOSC portal.

Ask me anything about…

The EOSC Future ‘ask me anything’ webinars aim to encourage uptake among users as well as show potential service providers how their resources could be featured through EOSC.

For each session, EOSC community members, experts and project coordinators will present an EOSC resource. As needed, there will be a demonstrative use case to show how a specific type of resource can be accessed and used via the platform. For all webinars, particular emphasis will be placed on answering any and all questions from the audience.

Registration

Register for specific sessions by following the links below:

Visit the EOSC Future website for updates on upcoming webinar topics and dates.

LifeWatch ERIC at the EU – Russian Federation Symposium on Research Infrastructures

Symposium on RIs

On Friday, 17 December, LifeWatch ERIC CTO Juan Miguel González-Aranda gave a presentation at the EU – Russian Federation Symposium on Research Infrastructures (RIs). The virtual symposium brought together delegates from Russian and European RIs, active in various scientific domains, to raise awareness of the broad array of scientific opportunities offered to scientists and for RI cooperation in Europe and in the Russian Federation.

In his presentation, “Fostering EU-Russian Federation e-Biodiversity and Ecosystem Research, Sustainable Services provision and Conservation Mechanisms, Together” which he gave on behalf of the LifeWatch ERIC Executive Board, Dr González-Aranda suggested reinforcing existing communities-of-practice between the blocs, as well as creating an “essential e-Research Collaboration middleware” to enhance their interoperability. He also spoke about the wealth of Russian biodiversity data already available on the GBIF, and how LifeWatch ERIC can support the strategy for Transition of the Russian Federation to the Model of Sustainability Development through the provision of FAIRness mechanisms, such as integration into the EOSC.

You can see the full agenda of the event here.

CREMLINplus (Connecting Russian and European Measures for Large-scale Research Infrastructures – plus) is an EU Horizon 2020 project fostering European-Russian scientific and technical collaboration in the field of research infrastructures (RIs).

RI-VIS project is an EU Horizon 2020 project designed to increase the visibility of European research infrastructures (RIs) to new communities in Europe and beyond.

New ESFRI Roadmap Launched

ESFRI Roadmap

 Αfter a two-year-long process of hard and meticulous work by a great number of scientists and ESFRI delegates, a new ESFRI Roadmap was published on 7 December 2021. ESFRI presented the 2021 ESFRI Roadmap on Large Scale Research Infrastructures during a half-day online conference, which you can watch here. For more information, please visit the Launch Event webpage. The ESFRI Roadmap contains probably the best European science facilities based on a thorough evaluation and selection procedure. It combines ESFRI Projects, which are new research infrastructures in progress towards implementation, and ESFRI Landmarks, successfully implemented Research Infrastructures. The document also describes the broader Landscape of research in Europe which is an important component to ESFRI methodology. 

The ESFRI Roadmap 2021 includes 11 new Research Infrastructure Projects and reports on the development of research infrastructures under the existing Roadmap. All previous ESFRI Roadmap updates proved to be very influential and provided useful strategic guidance for European Countries’ investments, which goes beyond the research infrastructure domain. The 2021 update also considers the merits of the Open science concept and highlights the quest to address global challenges, as reflected in the UN Sustainable Development Goals. One of the key aspects of ESFRI rests in ensuring that excellent scientists have access to Europe’s best Research Infrastructures, irrespective of borders. This requires truly pan-European collaboration and a global outlook. In this process, ESFRI has acquired immense and valuable experience which it is pleased to share across countries and research infrastructure projects.

Follow and Share Roadmap 2021 news on Twitter: #ESFRIRoadmap2021

Information taken from the ESFRI website.

LifeWatch ERIC in round table: “A Preview of the Role of Science at the EU-Africa Summit 2022”

EU-Africa Summit 2022

On 8–9 December 2021, AERAP Science (the Africa-Europe Science and Innovation Platform) hosted the round-table session “A preview on the Role of Science at the EU-Africa Summit 2022”, to consider the contribution of science to the priorities for the EU-Africa Summit on 17–18 February 2022 in Brussels. In his contribution, Dr Juan Miguel González-Aranda, LifeWatch ERIC CTO and ERIC Forum Executive Board Member, addressed the necessity of establishing an EU-AFRICA e-Biodiversity network, in order to accomplish the Sustainable Development Goals regarding the sustainable provision of ecosystem services.

For more information on this event, please see the AERAP article.

Full participant list:

Orla Feely – Vice President for Research, Innovation & Impact (VPRII), University College Dublin, Ireland

Erik Hansalek – Federal Ministry of Education and Research (BMBF), Germany

Racey Muchilwa – Head of Novartis, Sub Saharan Africa (SSA), Novartis, Kenya

Daan du Toit – Deputy Director-General: ICR, Department of Science and Innovation, South Africa

Maria Cristina Russo – Director for Global Approach and International Cooperation in R&I at European Commission, European Commission, Belgium

Mahama Ouedraogo – Director, Science and Technology Department, African Union Commission, Ethiopia

Shamila Nair-Bedouelle – Assistant Director-General for Natural Sciences, UNESCO, France

Jean-Pierre Bourguignon – Institut des hautes études scientifiques (IHES), France

Juan Miguel González-Aranda – LifeWatch ERIC Chief Technology Officer & ERIC FORUM Executive Board Member

Michael Makanga – Director, European Developing Countries Clinical Trials Partnership (EDCTP), Netherlands

Raham Rachdi – USPA, Paris

Rahel Belete – Kilimanjaro Innovation Hub, Ethiopia

Djime Adoum – Director General, Sahel Coalition, Chad

Bernd Halling – Head of Corporate Strategy, Bayer AG

Intisar Soghayroun – Minister, Ministry of Higher education and Scientific Research, Sudan

Space4Climate Action: LifeWatch ERIC at the World Space Forum

Space4Climate Action

Yesterday, during the second day of the 2021 World Space Forum “Space4Climate Action” organised by UNOOSA (the United Nations Office for Outer Space Affairs), LifeWatch ERIC CTO, Dr Juan Miguel González-Aranda, presented “Towards the establishment of a global e-Biodiversity network for Sustainable Development Goal accomplishment and Ecosystem Services provision”. Dr González-Aranda highlighted that humanity is bringing our life support system, the biosphere, to the point of collapse, proposing that to solve this situation we must deepen our current level of knowledge, move beyond the present fragmentation of science, and foster greater complementarity and synergy between disciplines. One of the ways to do this being the development of new trans-disciplinary paradigms and the building of synthetic knowledge, with the aim of boosting innovation and a great involvement of young scientists and civil society.

LifeWatch ERIC is Europe’s first line of response to the biodiversity emergency, applying state-of-the-art ICT (Remote Sensing, Big Data, HPC-Cloud-Edge Computing, Blockchain, AI-Machine Learning, IoT-Sensor Networks, etc.) and services to scientific Communities-of-Practice and research centres all over the world through its distributed e-Infrastructure. It engages with and interconnects Researchers, Technologists, Decision-makers, Environmental Managers, Companies, Entrepreneurs, and Citizen Scientists, helping these stakeholders to develop their activities into Virtual Research Environments (VREs). This demonstrates the added value which ICT brings to battling “The Big Five” significant causes of biodiversity loss (changing use of sea and land, direct exploitation of organisms, climate change, pollution and invasive non-native species), contributing significantly to the introduction of the appropriate measures to combat them. LifeWatch ERIC is particularly involved, for instance, in Aichi Target 9, regarding Non-indigenous and Invasive species.

These activities are being carried out in synergy with the UN SDGs (in particular, 15: Life on Land and 14: Life on Water), the EU Biodiversity Strategy for 2030, the European Green Deal, and many more. This is in addition to the essential role of the forthcoming Global Europe instrument (as often cited in ongoing EU-CELAC and EU-African Union cooperation) in relation to indigenous knowledge. The recognition of the importance of indigenous knowledge in reversing biodiversity loss is further reflected in the recent creation of IKRI (the Indigenous Knowledge Research Infrastructure) where key outcomes are anticipated in cooperation with prominent stakeholders, including UNOOSA, ITU (The UN International Telecommunications Union) and LifeWatch ERIC.

You can see the full programme here.

LWGreece Research Infrastructure Data Services

Research Infrastructure Data Services

The Hellenic Centre for Marine Research (HCMR) is working on the enhancement of the LifeWatchGreece Research Infrastructure (LWGreece RI) Data Services. The purpose of these activities is to provide end-users with a user-friendly service, enabling them to search and access (meta)data from two sources, Micro-CT vLab and IPT MedOBIS.

The activities are divided into three major categories:

(a) design and implementation of facilities for harvesting data

(b) data modelling and semantic data transformation activities, and

(c) updates and enhancements of the Data Services of the LWGreece RI.

More details of these activities are given below:

A set of supporting services and tools have been designed and implemented, able to harvest resources from two databases: (a) the IPT MedOBIS database and (b) the Micro-CT vLab database. A harvesting mechanism has been implemented that exports information from the above-mentioned sources, which are subsequently transformed and added to LWGreece repositories (see point below). 

After harvesting data from the sources described above, they needed to be homogenised before depositing them in the repositories of the LWGreece infrastructure. To this end, a set of mappings was implemented, using X3ML Specification Language,[1] that describes the transition of the harvested resources from their original schemata, to a common target top-level ontology MarineTLO.[2] The result was a set of ontological-based descriptions regarding MarineTLO that were inserted into the LWGreece semantic repositories.

Several endpoints of the Data Services were updated, so that they can properly retrieve information from LWGreece semantic repositories. In addition, we have enhanced the services based on the findings and the updated modelling that emerged from the two new sources that were used (i.e., IPT MedOBIS, micro-CT vLab). 

It is worth mentioning that the Data Services (along with all the other available vLabs) is now available through the Metadata Catalogue of LifeWatch ERIC. Allowing this central catalogue to be machine-interoperable is necessary for the population of the catalogue, and implements the FAIR principles and EOSC-interoperability, promoted through ENVRI-FAIR WP9 and WP11.

[1] Marketakis, Y., Minadakis, N., Kondylakis, H., Konsolaki, K., Samaritakis, G., Theodoridou, M., Flouris, G. and Doerr, M., 2017. X3ML mapping framework for information integration in cultural heritage and beyond. International Journal on Digital Libraries, 18(4), pp. 301-319.

[2] Tzitzikas, Y., Allocca, C., Bekiari, C., Marketakis, Y., Fafalios, P., Doerr, M., Minadakis, N., Patkos, T. and Candela, L., 2016. Unifying heterogeneous and distributed information about marine species through the top level ontology MarineTLO. Program, 50(1), pp. 16-40.

Explainers: the Micro-CT vLab

Micro-CT vLab

The Micro-CT vLab is a virtual laboratory which is hosted in the Hellenic Centre for Marine Research (HCMR) and was initially established during the ESFRI LifeWatchGreece Research Infrastructure. This virtual lab offers users access to virtual galleries of various samples which can be displayed and downloaded through a web application. This tool has been updated over the Elixir-GR, BIOIMAGING-GR and Synthesys+ projects with the addition of several new features. Firstly, the Micro-CT vLab has now been upgraded to Drupal version 9. A series of micro-CT datasets from medical to biological studies can be uploaded in order to be stored and disseminated.

Furthermore, the Micro-CT vLab has now a REST API for creating new content. Through the API, the user has the ability to access micro-CT API endpoints, which can retrieve information about various micro-CT scans, species and metadata information related with the micro-CT datasets. A metadata catalogue has been also created in order to dynamically display the complete metadata available for each dataset which are published in the micro-CT. Finally, following registration, the user now has the ability to upload the original micro-CT datasets and the related metadata through a user-friendly form.

You can watch a short demonstration video of the Micro-CT vLab below.

New BiCIKL project to build a freeway between pieces of biodiversity knowledge

BiCIKL

In a recently started Horizon 2020-funded project, 15 European institutions, from 10 countries, representing both the continent’s and global key players in biodiversity research and natural history, deploy and improve their own and partnering infrastructures to bridge gaps between each other’s biodiversity data types and classes. LifeWatch ERIC is one of these institutions. By linking their technologies, these project partners are set to provide flawless access to data across all stages of the research cycle.

Three years in, BiCIKL (abbreviation for Biodiversity Community Integrated Knowledge Library) will have created the first-of-its-kind Biodiversity Knowledge Hub, where a researcher will be able to retrieve a full set of linked and open biodiversity data, thereby accessing the complete story behind an organism of interest: its name, genetics, occurrences, natural history, as well as authors and publications mentioning any of those.

Ultimately, the project’s products will solidify Open Science and FAIR (Findable, Accessible, Interoperable and Reusable) data practices by empowering and streamlining biodiversity research.

Together, the project partners will redesign the way biodiversity data is found, linked, integrated and re-used across the research cycle. By the end of the project, BiCIKL will provide the community with a more transparent, trustworthy and efficient highly automated research ecosystem, allowing for scientists to access, explore and put into further use a wide range of data with only a few clicks.

“In recent years, we’ve made huge progress on how biodiversity data is located, accessed, shared, extracted and preserved, thanks to a vast array of digital platforms, tools and projects looking after the different types of data, such as natural history specimens, species descriptions, images, occurrence records and genomics data, to name a few. However, we’re still missing an interconnected and user-friendly environment to pull all those pieces of knowledge together. Within BiCIKL, we all agree that it’s only after we puzzle out how to best bridge our existing infrastructures and the information they are continuously sourcing that future researchers will be able to realise their full potential,” explains BiCIKL’s project coordinator Prof. Lyubomir Penev, CEO and founder of Pensoft, a scholarly publisher and technology provider company. 

Continuously fed with data sourced by the partnering institutions and their infrastructures, BiCIKL’s key final output: the Biodiversity Knowledge Hub, is set to persist with time long after the project has concluded. On the contrary, by accelerating biodiversity research that builds on – rather than duplicates – existing knowledge, it will in fact be providing access to exponentially growing contextualised biodiversity data.

Follow BiCIKL Project on Twitter and Facebook. Join the conversation on Twitter at #BiCIKL_H2020.

LifeWatch ERIC in IKRI Launch

Click here to watch a short explanatory video on IKRI.

The UNGA76 Science Summit is in full swing, and LifeWatch ERIC has already played an active part in several sessions, looking forward to the LifeWatch ERIC-convened session on SDGs 14 and 15 on 1 October 2021. On 23 September, LifeWatch ERIC CTO, Dr Juan Miguel González-Aranda, alongside Prof Vladislav Popov and Ms Karina Angelieva from LifeWatch Bulgaria, took part in an important session on the launch of the Indigenous Knowledge Research Infrastructure (IKRI), which approximately 140 people attended.

The UNFSS (UN Food Systems Summit) recommended five ongoing Action Areas where the UN will place a particular focus and take increased responsibility to link the local to the global and support implementation at country level to maximise impact on the 2030 Agenda.* These Action Areas will help to organise, guide, and direct the wealth of initiatives emerging from the Summit process to achieve the SDGs. Action area 5: “Support the Means of Implementation” covers the following: Finance; Governance; Science and Knowledge (Indigenous Food Systems); Innovation, Technology, & Data, Capacity; and Human Rights, and beyond).

The “Global Research Initiative and Knowledge Repository to integrate Indigenous Knowledge into Food Systems” was developed as part of the UN Food Systems Summit process, with the collective efforts of CANEUS, together with The Fund for the Development of Indigenous Peoples of Latin America and the Caribbean (FILAC), United Nations Office for Outer Space Affairs (UNOOSA), The International Center for Agricultural Research in the Dry Areas (ICARDA), The Africa-Europe Science and Innovation Platform (AERAP) and LifeWatch ERIC. It will contribute to action area 5: “Support Means of Implementation”, and was launched at the UN FSS Summit.

This Global research initiative aims to develop digital infrastructure to support more comprehensive R&D collaboration between the UN and the EU, AU, and other regions, creating partnerships and sustained access to data and information sources globally and lessening the regulatory burden associated with access to and use of public data. The initiative will function as a digital infrastructure known as IKRI, based on the EU Strategy Forum for Research infrastructures ESFRI. It will have a component of “Technology-based Repository” that utilises frontier Technologies (Earth observation and geospatial intelligence with 4th Industrial Revolution Technologies) for the development of a portal that captures, processes, analyses and presents Indigenous knowledge through multiple sources.

The IKRI is hoped to increase the level and range of partners who can bring Indigenous knowledge to collaborative research supported by the EU Horizon Europe Programme and other research programmes implemented at state level and committed to supporting the SDGs. It would further leverage the EU Neighbourhood, Development and International Cooperation Programme, known as the Global Europe Programme, to support Indigenous knowledge, ensuring that developing nations are considered within the context of enabling global policies and related regulations to ensure that the global regulatory environment does not become a barrier to knowledge exchange, but rather supports access to and use of patent data, knowledge and know-how.

*(1) Nourish All People, (2) Boost Nature-based Solutions, (3) Advance Equitable Livelihoods, Decent Work & Empowered Communities, (4) Build Resilience to Vulnerabilities, Shocks and Stresses, and (5) Support Means of Implementation.